Best 3PL for Shopify: top 5 fulfillment partners in 2025

The best 3PL for Shopify connects directly to your store, ships orders with 99%+ accuracy, and gives you transparent pricing without hidden fees. But the Shopify app store lists thousands of “fulfillment” apps—and most aren’t actual 3PLs. Many are software connectors or freight brokers, not companies that warehouse, pick, pack, and ship from their own facilities.

This guide compares five 3PLs that integrate natively with Shopify, covering services, pricing structures, accuracy guarantees, and the specific use cases where each one fits best. Here’s a quick overview if you’re short on time:

Top 3PLs for Shopify

1) Red Stag Fulfillment

We may be biased in placing Red Stag Fulfillment so high on the best 3PLs for Shopify list, but we think we might be the better choice for you. You be the judge.

As a top third party logistics company, Red Stag Fulfillment provides warehousing, order fulfillment, picking and packing, and reverse logistics. We also offer additional services to optimize your supply chain, like inventory management, SKU analysis, and demand planning.

Accuracy rates and delivery times

With Red Stag Fulfillment, you can reach 96% of U.S. homes within two days. That’s because our fulfillment centers are strategically located for lower landed costs and faster deliveries than some of our competitors.

We provide 100% order fulfillment accuracy backed by our industry-leading guarantees. In the rare event a mistake occurs, we’ll make it right and pay you $50. Why? Because mistakes hurt your business, so it’s only right that they hurt us, too. This level of accountability lets you feel confident our priorities are always aligned with yours.

Pricing structure

Red Stag provides customers with full pricing transparency so you can better control your fulfillment costs. We design custom agreements based on your company’s specific details so our pricing matches exactly what you need—nothing more, nothing less.

With our accuracy guarantees, you can trust in pricing predictability, too. You’re never on the hook for the cost of the rare mistake.

Customer service

You can call Red Stag during our business hours and almost always get a live person to answer the phone. This is often a major selling point for Shopify merchants who may be used to dealing with chatbots and email threads for support.

Our dedicated experts resolve questions quickly and can help you discover opportunities to improve performance across all of your sales channels, not just Shopify.

Many of our Client Success team members started at Red Stag by working on the warehouse floor. They understand fulfillment inside and out and can guide you through all kinds of challenges, including cost optimizations and growth opportunities.

Other factors

We work across almost all product types, supporting Shopify stores and other omnichannel fulfillment needs. But we’re also one of the few 3PLs that can help you with large or heavy items.

Having a fulfillment partner that knows how to ship big, bulky products can help your business save money on packing and shipping. A great 3PL with experience can also limit damage risks, especially since larger items can be costly to return and replace. 

2) Shopify Fulfillment Network

The Shopify Fulfillment Network (SFN) provides direct-to-customer (DTC) and business-to-business (B2B) fulfillment services, including inventory storage, order picking and packing, shipping, and returns management. You can also use SFN to fulfill orders from other sales channels like marketplaces and social media. 

Accuracy and on-time rates

SFN doesn’t provide company-wide performance metrics for shipment accuracy and on-time deliveries. Customers can review these metrics for their shipments based on 30-, 60-, and 90-day periods on the SFN platform.

Pricing structure

Shopify Fulfillment Network offers weight-based unit pricing with volume-based storage fees that can be offset by multi-item discounts per order. The company also handles returns on a flat-fee basis. Prices may be higher than some competitors, but they provide scalable predictability that aligns costs with sales. There are no minimum order requirements or long-term contracts. 

Customer service

You can chat with customer support during U.S. East Coast business hours or create support tickets online after hours. If you need help integrating your Shopify store with the fulfillment platform, support is available during regular business and expanded weekend hours. 

Other factors

SFN has strict partnership rules for merchants. Not following them could result in penalties. For example, if ecommerce merchants don’t provide tracking and estimated arrival times for inbound shipments, SFN may refuse the shipment or charge fees. Similarly, if shipments don’t match forecasted demand, SFN may refuse them or apply variance fees

The company also recently transitioned fulfillment to a partner company, which may improve or otherwise impact the quality of its fulfillment service.   

3) Amazon Multi-Channel Fulfillment

Amazon Multi-Channel Fulfillment (MCF) is Amazon’s omnichannel fulfillment service. It’s separate from Fulfillment by Amazon, which caters to Amazon sales specifically. You can use MCF to handle orders from Shopify and other sales channels.

Accuracy rates and delivery times

Amazon MCF provides three delivery options: standard shipping, expedited shipping, and priority shipping. The company claims a 99.8% undamaged package delivery rate, based on small- and medium-sized business data. It also claims a higher than 97% on-time delivery, which is lower than some competitors.

Pricing structure

Amazon MCF provides transparent pricing, but its pricing tables and fee schedules can be time-consuming to review. You may experience a few surprises if you don’t thoroughly inspect how it uses details, like product category, size, and weight to determine pricing. 

Customer service

MCF customers can access 24/7 customer service support with a seller log-in. There’s also a knowledge base with articles that self-starters can use to resolve issues and learn more about ways to improve logistics for their businesses. 

Other factors

Amazon has approximately 1.5 million workers across 2,000 warehouses, so it has the labor and resources to provide reliable fulfillment for any size business—but it also relies heavily on standardization to meet demand. 

This means you can’t specify your packaging materials or compare and choose your trucking carriers. If these factors are important for your cost control and brand presence, you may need a different 3PL. 

4) ShipBob

ShipBob is one of the most popular VC-backed 3PLs offers warehousing, inventory management, picking and packing, shipping, and returns for Shopify stores and other sales channels. It focuses mainly on DTC fulfillment, but fulfills B2B orders, too.

Accuracy and on-time rates

ShipBob has more than 50 international fulfillment locations, so you can ship to almost every country using standard and expedited shipping options. In the U.S., you can reach customers within two days with no exceptions based on the number of warehouses you use. The 3PL claims a 99.96% on-time shipping rate and 99.95% accuracy rate.

Pricing structure

ShipBob customizes your pricing based on services. It calculates pricing based on services, like storage, order processing, pick and pack, and shipping. Beyond its core pricing, it may also provide additional pricing structures for customizations like branded packaging and kitting. 

Customer service

ShipBob provides 24/7 customer support by phone, chat, and email to address questions, issues, and exceptions. It also provides training and education resources, including documentation, videos, and webinars, to help you set up and grow your business. 

Other factors

ShipBob has recently expanded its social media fulfillment capabilities, so companies selling across Shopify and social may benefit from a 3PL partner that specializes in specific platforms like TikTok. 

5) LVK Logistics (formerly ShipHero)

ShipHero is a 3PL provides warehousing, picking, packing, shipping, and reverse logistics. It focuses on technology to streamline the fulfillment process, citing its warehouse management system (WMS), internal mobile application for warehouse staff, and real-time analytics as its core strengths. 

Accuracy and on-time rates

ShipHero doesn’t publish detailed fulfillment and shipment accuracy rates, but it claims its WMS supports an overall 99.99% accuracy rate. Its average fulfillment time is 3.5 days. 

Pricing structure

ShipHero provides a custom flat-pricing structure based on per-order fulfillment fees for picking and packing. Additional fees apply for branded packaging, kitting, and other specialty fulfillment needs. Monthly storage fees are based on volume. 

Customer service

Customers can access ShipHero customer support during business hours Monday to Friday and during shortened hours on Saturdays. For urgent matters after hours, an in-app ticketing system routes issues to customer support for follow-up. For more detailed help, you’ll need to schedule calls with their team. 

Other factors

Customers can access ShipHero customer support during business hours Monday to Friday and during shortened hours on Saturdays. For urgent matters after hours, an in-app ticketing system routes issues to customer support for follow-up. For more detailed help, you’ll need to schedule calls with their team. 

Honorable mentions for the best 3PLs for Shopify

• Shiphype
• AMZ Prep

What to know about Shopify 3PL companies

Searching “3PL” or “fulfillment” in the Shopify app store returns hundreds of results—but most aren’t actual 3PLs. Many are software connectors, shipping label generators, or broker platforms that route your orders to third-party warehouses you don’t control.

A Shopify 3PL should own or operate the warehouses where your inventory sits. They receive your products, store them, pick and pack orders when sales come in, and ship directly to your customers. If a provider can’t tell you exactly which facilities will handle your products, or if they’re just connecting you to someone else’s network, you’re adding a layer of complexity without gaining the accountability that makes outsourcing worthwhile.

Shopify 3PL core capabilities to look for

Every 3PL should handle receiving, warehousing, picking, packing, shipping, and returns. The difference between providers comes down to accuracy rates, technology integration, and how they handle exceptions. Here’s what each capability should look like for a Shopify store.

Receiving

Receiving is where inventory accuracy starts or breaks down. Warehouse staff check inbound shipments against purchase orders, verify quantities, inspect for damage, and log products into the warehouse management system. A 3PL with sloppy receiving creates phantom inventory—your Shopify store shows items in stock that don’t actually exist, leading to oversells and canceled orders. Ask prospective 3PLs how they handle receiving discrepancies and how quickly inbound shipments become available to sell.

Warehousing

Warehousing covers how and where your products are stored. A 3PL should slot your inventory based on velocity (fast-movers near packing stations), product dimensions, and any special requirements like climate control or hazmat compliance. Poor slotting increases pick times and error rates. For Shopify merchants with seasonal demand swings, confirm your 3PL offers flexible storage pricing so you’re not paying for empty shelf space in slow months.

Order fulfillment

When a Shopify order comes in, pickers retrieve items from warehouse locations and hand them to packers. The speed and accuracy of this process depends on the 3PL’s warehouse management system, pick methodology (batch picking, wave picking, zone picking), and staff training. If your store offers gift wrapping, custom inserts, or subscription boxes, confirm these instructions flow automatically from Shopify to the packing team—manual workarounds lead to missed requests and customer complaints.

Shipping

Shipping is the final step before your customer receives their order. The best Shopify 3PLs negotiate volume discounts with carriers like UPS, FedEx, and USPS—typically 15-30% below retail rates—and pass some of those savings to you. They also provide delivery estimates at checkout that they can actually meet. Ask for on-time delivery rates (look for 97%+) and clarify who pays when a carrier misses their SLA.

Reverse logistics

Returns cost ecommerce brands 15-30% of revenue on average, and poor returns handling makes it worse. A 3PL should receive returned items, inspect them, and either restock them under the original SKU or relist them as refurbished/discounted. Fast disposition—deciding what happens to each return—gets sellable inventory back into stock before you lose the next sale. Ask how long returns sit before processing and what percentage of returns are successfully restocked.

Other 3PL and supply chain services

Core fulfillment—receiving, storing, picking, packing, shipping—is table stakes. The 3PLs that actually move the needle on profitability offer services that extend beyond the warehouse: freight coordination, inventory planning, demand forecasting, and value-added work like kitting. These capabilities matter most for Shopify merchants scaling past $1M in annual revenue or managing complex product catalogs. 

Freight forwarding

Freight is how products move in bulk—from factories to ports to your 3PL’s warehouse. Some Shopify 3PLs coordinate this inbound logistics for you, leveraging their carrier relationships to negotiate better rates than you’d get on your own.

For merchants importing internationally, a 3PL with freight forwarding handles ocean or air shipping, customs brokerage, and duties calculation. This consolidates your supply chain under one partner instead of juggling separate freight forwarders, customs brokers, and warehouse providers. The cost savings vary, but merchants importing container loads often see 10-20% lower landed costs by routing freight through a 3PL’s existing contracts.

SKU analysis

SKU analysis identifies which products make money, which drain resources, and which need reordering before you stockout. A 3PL with this capability tracks sell-through rates, days of inventory on hand, and contribution margin by SKU—then flags when fast-movers need replenishment or slow-movers need markdowns.

This matters most for Shopify merchants with 100+ SKUs or those selling across multiple channels from consolidated inventory. Without SKU-level visibility, you’re guessing at purchase orders and discovering stockouts when customers complain. Ask whether your 3PL provides inventory dashboards and automated reorder alerts, or if you’ll need separate software.

Inventory management

Inventory management goes beyond counting stock. It includes demand forecasting, safety stock calculations, purchase order timing, and dead stock identification. Physical inventory—cycle counts, location accuracy, shrinkage tracking—is standard at any decent 3PL.

The strategic layer is where most Shopify merchants struggle. Forecasting demand, setting reorder points, and balancing carrying costs against stockout risk requires either dedicated headcount or a 3PL that offers inventory planning as a service. For brands doing $2M+ annually, outsourcing this to a 3PL with demand planning expertise often costs less than hiring an inventory analyst—and the 3PL has visibility into your actual warehouse data.

Kitting and assembly

Kitting bundles multiple SKUs into a single package—subscription boxes, gift sets, variety packs, or buy-one-get-one promotions. Brands using kitting typically see 15-25% higher average order values compared to selling items individually.

A 3PL handles kitting by pre-assembling bundles or building them on-demand when orders come in. The second approach (on-demand kitting) uses more labor but avoids inventory lockup—you’re not stuck with 500 pre-built holiday bundles that didn’t sell. For Shopify stores running subscription boxes, confirm your 3PL syncs kit components with your subscription platform (Recharge, Skio, Bold) so inventory decrements correctly across all SKUs.

Assembly is different from kitting. If your products ship unassembled or require configuration before packing—think furniture, electronics with multiple components, or customized items—look for a 3PL with light manufacturing capabilities. Assembling at the warehouse instead of the factory reduces damage risk and lets you offer more product variations without SKU explosion.

Work with the best 3PL Shopify company for your business

The best Shopify 3PL for your business depends on what you ship, where your customers are, and how fast you’re growing. Most 3PLs optimize for small, lightweight products that fit neatly into standard boxes. If that’s your catalog, you have plenty of options. But if you ship heavy, bulky, oversized, or high-value products, most 3PLs will either reject you or charge punitive rates.

Red Stag Fulfillment specializes in the products other 3PLs struggle with: items over 10 lbs, oversized packaging, and high-value SKUs that need extra care. We back every order with a 100% accuracy guarantee—and pay you $50 if we ever make a mistake, because any 3PL errors can cost you customers.

If you’re evaluating Shopify 3PLs and your products don’t fit the standard small-and-light mold, request a custom quote to see how our pricing compares. We’ll show you exactly what fulfillment costs look like for your catalog—no hidden fees, no surprises after you sign.